Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101166334Zgc:66427. (264 aa)    
Predicted Functional Partners:
ube2n
Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.701
LOC101170318
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.701
ubc
Ubiquitin B.
   
  0.679
rps27a
Ribosomal protein S27a.
    
  0.552
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
     
 0.503
uba5
Ubiquitin-like modifier activating enzyme 5.
     
 0.501
allc
Allantoicase.
      
 0.498
aqr
Aquarius intron-binding spliceosomal factor.
      
 0.474
ncf4
Neutrophil cytosolic factor 4.
      
 0.462
CLEC3A
C-type lectin domain family 3 member A.
      
 0.455
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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