Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem117Transmembrane protein 117. (520 aa)    
Predicted Functional Partners:
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
      
 0.750
NAALADL2
N-acetylated alpha-linked acidic dipeptidase like 2.
      
 0.742
kbtbd12
Kelch repeat and BTB (POZ) domain containing 12.
      
 0.712
tmem161b
Transmembrane protein 161B.
      
 0.695
cwc22
CWC22 spliceosome associated protein homolog.
      
 0.692
VPS13B
Vacuolar protein sorting 13 homolog B.
      
 0.610
tafa2
Uncharacterized protein.
      
 0.607
tmem11
Transmembrane protein 11.
      
 0.606
LOC101169451
Transmembrane protein 106C.
      
 0.605
babam2
BRISC and BRCA1 A complex member 2.
      
 0.564
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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