STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem117Transmembrane protein 117. (520 aa)    
Predicted Functional Partners:
Unc79
Uncharacterized protein.
      
 0.560
zcrb1
Zinc finger CCHC-type and RNA binding motif 1.
      
 0.559
NAALADL2
N-acetylated alpha-linked acidic dipeptidase like 2.
      
 0.559
tmem161b
Transmembrane protein 161B.
      
 0.558
kbtbd12
Kelch repeat and BTB (POZ) domain containing 12.
      
 0.487
tmem11
Transmembrane protein 11.
      
 0.482
tafa2
Uncharacterized protein.
      
 0.461
cwc22
CWC22 spliceosome associated protein homolog.
      
 0.457
ENSORLP00000038455
RING-type domain-containing protein.
      
 0.429
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.