STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163102Stromal cell-derived factor 2. (226 aa)    
Predicted Functional Partners:
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
 
 0.764
LOC101162152
Ras-related GTP binding A.
      
 0.622
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 
 0.618
LOC101158289
Sperm associated antigen 1a.
      
 0.613
creld2
Cysteine-rich with EGF-like domains 2.
   
 
 0.599
dag1
Dystroglycan 1.
    
 0.584
LOC101165732
Peptidase S72 domain-containing protein.
    
 0.584
cdc42se2
CDC42 small effector 2.
   
 
 0.582
Spag1
Uncharacterized protein.
      
 0.561
ddost
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol- pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across t [...]
   
 
 0.515
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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