STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101175009Anion exchange protein. (996 aa)    
Predicted Functional Partners:
LOC101169560
Transient receptor potential cation channel, subfamily V, member 6; Belongs to the transient receptor (TC 1.A.4) family.
      
 0.608
H2LCR5_ORYLA
Growth arrest-specific 1b.
      
 0.537
LOC101166353
Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.
    
 
 0.529
LOC101169686
Solute carrier family 38 member 3a.
   
  
 0.517
gapdh
Glyceraldehyde-3-phosphate dehydrogenase.
    
 
 0.517
LOC101166708
NPHS2 stomatin family member, podocin.
    
 0.505
LOC101174771
Solute carrier family 8 member 1b; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
   
  
 0.504
rhcg
Rh family, C glycoprotein b; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
    
 
 0.499
kcnj1
Potassium inwardly-rectifying channel, subfamily J, member 1b.
      
 0.497
LOC101160577
Solute carrier organic anion transporter family member.
      
 0.468
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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