Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ddx10RNA helicase. (834 aa)    
Predicted Functional Partners:
aatf
Apoptosis antagonizing transcription factor.
   
 
 0.986
nol10
Nucleolar protein 10.
   
 
 0.984
bysl
Bystin-like.
   
 
 0.981
ddx18
RNA helicase.
   
 
 0.979
wdr43
WD repeat domain 43.
   
 0.973
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.968
srfbp1
BUD22 domain-containing protein.
  
 
 0.968
nop58
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.967
H2MCJ8_ORYLA
Programmed cell death 11.
   
 0.963
nom1
Nucleolar protein with MIF4G domain 1.
   
 
 0.962
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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