STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx10RNA helicase. (834 aa)    
Predicted Functional Partners:
ddx18
RNA helicase.
  
  
0.989
utp3
UTP3 small subunit processome component.
   
 0.977
abt1
Activator of basal transcription 1.
   
 
 0.977
nom1
Nucleolar protein with MIF4G domain 1.
   
 
 0.973
esf1
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).
   
 
 0.973
Esf1
Uncharacterized protein.
   
 
 0.973
nop14
NOP14 nucleolar protein homolog (yeast).
   
 0.967
nol6
Nucleolar protein 6.
   
 0.967
aatf
Apoptosis antagonizing transcription factor.
   
 
 0.966
rrp36
Ribosomal RNA processing 36.
   
 0.966
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.