Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pgpPhosphoglycolate phosphatase; Belongs to the HAD-like hydrolase superfamily. (304 aa)    
Predicted Functional Partners:
hao2
Hydroxyacid oxidase 2 (long chain).
   
 
 0.930
hao1
Hydroxyacid oxidase (glycolate oxidase) 1.
   
 
 0.930
LOC101154959
Glyoxylate reductase/hydroxypyruvate reductase a; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.923
LOC101163636
Glyoxylate reductase/hydroxypyruvate reductase b; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.923
plpbp
Pyridoxal phosphate homeostasis protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which may be involved in intracellular homeostatic regulation of pyridoxal 5'- phosphate (PLP), the active form of vitamin B6.
  
  
 0.608
mrtfa
Myocardin related transcription factor Ab.
      
 0.608
pnpo
Pyridoxamine 5'-phosphate oxidase.
   
  
 0.547
pgls
6-phosphogluconolactonase; Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
  
 
 0.530
gk5
Glycerol kinase 5; Belongs to the FGGY kinase family.
  
  
 0.520
LOC101159524
G_PROTEIN_RECEP_F1_2 domain-containing protein.
      
 0.499
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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