Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101169137Uncharacterized protein. (1650 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
  0.640
LOC101160447
RAN binding protein 2.
   
  0.504
LOC101167746
Uncharacterized protein.
  
 
   0.499
H2N2X6_ORYLA
Pogo transposable element derived with ZNF domain b.
  
 
   0.460
tcf20
Transcription factor 20.
  
 
   0.460
scaf1
SR-related CTD-associated factor 1.
  
     0.453
LOC101162800
VPS9 domain-containing protein.
  
     0.444
gcm2
GCM domain-containing protein.
  
     0.435
SEMA4F
Ssemaphorin 4F; Belongs to the semaphorin family.
  
  
  0.429
LOC105357584
Uncharacterized protein.
  
     0.421
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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