STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsrp1Nuclear speckle splicing regulatory protein 1. (456 aa)    
Predicted Functional Partners:
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
   0.908
H2MT00_ORYLA
PWI domain-containing protein.
     
 0.783
ppil4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
   
 0.759
slu7
SLU7 homolog, splicing factor.
   
 
 0.734
ncmap
Uncharacterized protein.
     
 0.729
LOC101162294
Cwf21 domain-containing protein.
   
 
 0.720
yju2
YJU2 splicing factor homolog.
   
 
  0.694
parpbp
PARP1 binding protein.
   
 0.686
dhx40
DEAH (Asp-Glu-Ala-His) box polypeptide 40.
   
 0.685
cwc25
CWC25 spliceosome associated protein homolog.
   
 
 0.683
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.