Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167735RRM domain-containing protein. (330 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.992
rbmx
RNA binding motif protein X-linked.
   
 0.991
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.991
LOC101167466
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.991
hnrnpu
Heterogeneous nuclear ribonucleoprotein Ub.
   
 0.977
LOC101174914
Uncharacterized protein.
   
 0.962
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
   
 0.962
eif4a3
Eukaryotic translation initiation factor 4A3.
   
 0.933
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 
 0.928
ilf3
Interleukin enhancer binding factor 3b.
   
 
 0.906
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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