Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166998Uncharacterized protein. (2090 aa)    
Predicted Functional Partners:
Neb
SH3 domain-containing protein.
 
   
 
0.989
ENSORLP00000045917
Uncharacterized protein.
 
     
0.889
zyx
Uncharacterized protein.
    
 
 0.632
MYOZ1
Myozenin 1.
   
  
 0.559
LOC101159505
Titin-cap (telethonin).
   
 
 0.537
flnc
Uncharacterized protein.
   
 
 0.509
MYPN
Myopalladin.
   
 0.509
tmod4
Tropomodulin 4 (muscle).
   
 0.492
mybpc1
Myosin binding protein C, slow type.
   
 0.488
LOC101171215
Troponin C type 1b (slow).
   
 
 0.479
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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