STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166998Uncharacterized protein. (2090 aa)    
Predicted Functional Partners:
Neb
SH3 domain-containing protein.
 
     
0.899
ENSORLP00000045917
Uncharacterized protein.
 
     
0.889
tmod4
Tropomodulin 4 (muscle).
   
 0.607
MYPN
Myopalladin.
   
 0.526
mybpc1
Myosin binding protein C, slow type.
   
 0.516
flnc
Uncharacterized protein.
   
 
 0.511
LOC101171215
Troponin C type 1b (slow).
   
 
 0.503
MYOZ1
Myozenin 1.
   
  
 0.500
LOC101158891
Myosin binding protein C, fast type b.
   
 0.492
mybpc2
Uncharacterized protein.
   
 0.463
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.