Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctssCathepsin S; Belongs to the peptidase C1 family. (327 aa)    
Predicted Functional Partners:
bcl2
BCL2 apoptosis regulator b.
     
 0.919
LOC111946846
Cathepsin D; Belongs to the peptidase A1 family.
   
 0.745
LOC101161712
Cathepsin D.
   
 0.719
LOC101168958
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 0.719
LOC101172600
Baculoviral IAP repeat containing 2.
     
 0.706
ctsb
Cathepsin Ba; Belongs to the peptidase C1 family.
  
0.684
LOC101165526
Cathepsin Bb; Belongs to the peptidase C1 family.
  
0.665
LOC101155061
Baculoviral IAP repeat containing 5a.
     
 0.653
LOC101166883
X-linked inhibitor of apoptosis.
     
 0.653
LOC101165300
Uncharacterized protein.
     
 0.652
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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