Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101166832Testis expressed 2, like. (1042 aa)    
Predicted Functional Partners:
ccdc115
Coiled-coil domain containing 115.
    
 0.511
vapa
VAMP (vesicle-associated membrane protein)-associated protein A, like.
    
 0.485
LOC101174096
VAMP (vesicle-associated membrane protein)-associated protein B and C.
    
 0.485
DDRGK1
DDRGK domain containing 1.
    
  0.482
stx5
Syntaxin 5A; Belongs to the syntaxin family.
     
  0.480
pdzd8
PDZ domain containing 8.
   
 
 0.464
nkiras2
NFKB inhibitor interacting Ras-like 2.
      
 0.457
bcap29
Uncharacterized protein.
   
  0.423
bcap31
B cell receptor associated protein 31.
   
  0.423
VAPB
VAMP associated protein B and C.
    
 0.412
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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