STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156610Uncharacterized protein. (791 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30.
   
 0.735
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
  0.543
LOC101160447
RAN binding protein 2.
   
  0.504
rps9
Ribosomal protein S9.
   
 0.486
imp4
IMP U3 small nucleolar ribonucleoprotein 4.
     
  0.453
LOC110017553
G_PROTEIN_RECEP_F1_2 domain-containing protein.
  
     0.430
LOC101163979
Anti-silencing function 1Ba histone chaperone.
    
 0.404
ASF1B
Uncharacterized protein.
    
 0.404
LOC101163864
CLOCK-interacting pacemaker a.
  
     0.401
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.