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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LDE2_ORYLAUncharacterized protein. (347 aa)    
Predicted Functional Partners:
mapre1
Microtubule-associated protein, RP/EB family, member 1b.
    
 
 0.583
bub3
BUB3 mitotic checkpoint protein.
    
 0.576
mapre2
Microtubule-associated protein, RP/EB family, member 2.
    
 
 0.573
LOC101160378
Microtubule-associated protein, RP/EB family, member 3a.
    
 
 0.573
LOC101174390
Microtubule-associated protein, RP/EB family, member 3b.
    
 
 0.573
ckap5
Cytoskeleton associated protein 5.
    
 
 0.556
dctn2
Dynactin 2 (p50).
    
 
 0.555
H2MU36_ORYLA
Uncharacterized protein.
    
 
 0.549
ENSORLP00000028214
Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.549
ENSORLP00000029827
Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.549
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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