STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADAMTS20ADAM metallopeptidase with thrombospondin type 1 motif 20. (1865 aa)    
Predicted Functional Partners:
LOC100049402
Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.
      
 0.642
H2MJL0_ORYLA
Myosin VIIAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.528
usp1
Ubiquitin carboxyl-terminal hydrolase.
      
 0.504
Frat2
Glycogen synthase kinase binding protein.
      
 0.503
dpy19l3
Dpy-19 like C-mannosyltransferase 3.
      
 0.438
dpy19l1
Dpy-19-like 1, like (H. sapiens).
      
 0.438
H2MCD1_ORYLA
Fibulin 2.
    
 0.426
FBLN2
Fibulin 2.
    
 0.426
FBLN1
Fibulin 1.
    
 0.402
LOC101154774
Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes.
    
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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