atpaf2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

atpaf2

ATP synthase mitochondrial F1 complex assembly factor 2. (285 aa)

Predicted Functional Partners:

atp5f1b

0.972

atpaf1

0.951

fmc1

0.904

spg21

0.883

tmem70

0.878

LOC101160076

0.873

LOC101169376

0.873

cdca8

0.793

Mrm1

0.713

Atp5f1e

0.710

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atp5f1e	LOC101160076	ENSORLP00000029881	ENSORLP00000004661	ATP synthase F1 subunit epsilon.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.994
Atp5f1e	LOC101169376	ENSORLP00000029881	ENSORLP00000006315	ATP synthase F1 subunit epsilon.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.994
Atp5f1e	atp5f1b	ENSORLP00000029881	ENSORLP00000004384	ATP synthase F1 subunit epsilon.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
Atp5f1e	atpaf2	ENSORLP00000029881	ENSORLP00000003985	ATP synthase F1 subunit epsilon.	ATP synthase mitochondrial F1 complex assembly factor 2.	0.710
Atp5f1e	cdca8	ENSORLP00000029881	ENSORLP00000012471	ATP synthase F1 subunit epsilon.	Cell division cycle associated 8.	0.949
Atp5f1e	tmem70	ENSORLP00000029881	ENSORLP00000044500	ATP synthase F1 subunit epsilon.	Transmembrane protein 70.	0.694
LOC101160076	Atp5f1e	ENSORLP00000004661	ENSORLP00000029881	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase F1 subunit epsilon.	0.994
LOC101160076	LOC101169376	ENSORLP00000004661	ENSORLP00000006315	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
LOC101160076	atp5f1b	ENSORLP00000004661	ENSORLP00000004384	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
LOC101160076	atpaf1	ENSORLP00000004661	ENSORLP00000030463	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase mitochondrial F1 complex assembly factor 1.	0.615
LOC101160076	atpaf2	ENSORLP00000004661	ENSORLP00000003985	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase mitochondrial F1 complex assembly factor 2.	0.873
LOC101160076	cdca8	ENSORLP00000004661	ENSORLP00000012471	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cell division cycle associated 8.	0.970
LOC101169376	Atp5f1e	ENSORLP00000006315	ENSORLP00000029881	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase F1 subunit epsilon.	0.994
LOC101169376	LOC101160076	ENSORLP00000006315	ENSORLP00000004661	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.900
LOC101169376	atp5f1b	ENSORLP00000006315	ENSORLP00000004384	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
LOC101169376	atpaf1	ENSORLP00000006315	ENSORLP00000030463	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase mitochondrial F1 complex assembly factor 1.	0.615
LOC101169376	atpaf2	ENSORLP00000006315	ENSORLP00000003985	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase mitochondrial F1 complex assembly factor 2.	0.873
LOC101169376	cdca8	ENSORLP00000006315	ENSORLP00000012471	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Cell division cycle associated 8.	0.970
Mrm1	atpaf2	ENSORLP00000043177	ENSORLP00000003985	Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae).	ATP synthase mitochondrial F1 complex assembly factor 2.	0.713
atp5f1b	Atp5f1e	ENSORLP00000004384	ENSORLP00000029881	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase F1 subunit epsilon.	0.999