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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hectd3HECT domain containing 3. (856 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 
0.786
fau
40S ribosomal protein S30.
   
 0.667
rps27a
Ribosomal protein S27a.
   
 0.594
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.574
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
 0.574
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
    
 0.525
pgm2
Phosphoglucomutase 2.
   
    0.501
pgm2l1
Phosphoglucomutase 2-like 1.
   
    0.501
trrap
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.501
kiaa2013
Si:dkeyp-104h9.5.
      
 0.485
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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