STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162933Cholinergic receptor nicotinic alpha 6 subunit. (594 aa)    
Predicted Functional Partners:
LOC101158195
Cholinergic receptor, nicotinic, alpha 4b.
  
0.583
CHRNA1-2
Cholinergic receptor nicotinic alpha 1 subunit.
  
0.583
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
  
0.581
LOC101158221
Glutamate receptor, ionotropic, AMPA 3a.
   
  
 0.572
LOC101169874
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
  
 0.570
LOC101155076
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
  
 
0.555
LOC101166047
Glutamate receptor, metabotropic 3.
   
  
 0.547
LOC101175467
Si:dkey-1h24.2; Belongs to the G-protein coupled receptor 1 family.
      
 0.531
grm1
Glutamate receptor, metabotropic 1a.
      
 0.528
LOC101173326
Glutamate receptor, ionotropic, kainate 1a.
    
 
 0.527
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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