STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101162933Cholinergic receptor nicotinic alpha 6 subunit. (594 aa)    
Predicted Functional Partners:
LOC101158195
Cholinergic receptor, nicotinic, alpha 4b.
  
 
0.971
LOC101155076
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
  
 
 
0.966
LOC101162690
Cholinergic receptor, nicotinic, beta 3b (neuronal).
  
 
0.961
LOC101168098
Cholinergic receptor, nicotinic, beta polypeptide 3a.
  
 
0.961
LOC101173433
Cholinergic receptor, nicotinic, alpha 5.
  
 
0.959
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
  
0.951
CHRNA1-2
Cholinergic receptor nicotinic alpha 1 subunit.
  
0.951
LOC101159423
Cholinergic receptor, nicotinic, beta 4 (neuronal).
  
  
 
0.949
LOC101162456
Si:ch73-380n15.2.
  
 
0.943
LOC101155633
Uncharacterized protein.
  
 
0.943
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.