STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wbp4Uncharacterized protein. (421 aa)    
Predicted Functional Partners:
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 0.963
zmat2
Zinc finger, matrin-type 2.
   
 0.959
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.937
mfap1
Microfibril associated protein 1.
   
 0.925
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.924
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
    
 0.921
lsm6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.918
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.914
UBL5
Ubiquitin like 5.
    
 0.898
TCERG1
Transcription elongation regulator 1.
    
 0.885
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.