STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YAF2RanBP2-type domain-containing protein. (182 aa)    
Predicted Functional Partners:
pcgf6
Polycomb group ring finger 6.
    
 0.961
RING1
Ring finger protein 1.
    
 0.956
rnf2
Ring finger protein 2.
    
 0.955
pcgf5
Polycomb group ring finger 5a.
    
 0.939
PCGF3
Polycomb group ring finger 3.
    
 0.928
LOC101172867
THAP-type domain-containing protein.
   
 0.923
wdr5
WD repeat domain 5.
    
 
 0.922
l3mbtl2
L3MBTL histone methyl-lysine binding protein 2.
    
 0.919
pcgf2
RING-type domain-containing protein.
    
 0.916
LOC101157658
YY1 associated factor 2.
  
  
 
0.901
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.