STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btf3Transcription factor BTF3; Belongs to the NAC-beta family. (162 aa)    
Predicted Functional Partners:
NACA
NAC-A/B domain-containing protein.
   
 0.995
LOC101166002
NAC alpha domain containing.
   
 0.985
rpl4
Ribosomal protein L4.
   
 
 0.981
rpl31
Ribosomal protein L31.
   
 
 0.974
rpl24
Ribosomal protein L24.
   
   0.968
rps3a
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
  
 
 0.967
rps5
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
   0.967
rps13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.966
RPL7A
Ribosomal protein L7a.
   
 
 0.966
rps6
Ribosomal protein S6.
   
 
 0.965
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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