STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btf3Transcription factor BTF3; Belongs to the NAC-beta family. (162 aa)    
Predicted Functional Partners:
NACA
NAC-A/B domain-containing protein.
   
 0.973
LOC101166002
NAC alpha domain containing.
   
 0.937
rpl31
Ribosomal protein L31.
   
 
 0.925
rpl4
Ribosomal protein L4.
   
 
 0.921
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.918
rpl14
Ribosomal protein L14.
   
 
 0.895
rpl29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
   0.885
rpl8
60S ribosomal protein L8.
   
 
 0.879
rpl32
Ribosomal protein L32.
   
   0.879
rpl18
Ribosomal protein L18.
   
 
 0.879
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.