STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156386Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (748 aa)    
Predicted Functional Partners:
H2MN86_ORYLA
ADP-ribosylation factor 6b.
    
 0.977
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.926
igf2r
Insulin-like growth factor 2 receptor.
    
 
 0.926
m6pr
Mannose-6-phosphate receptor (cation dependent).
    
 
 0.892
ubc
Ubiquitin B.
   
   0.749
rps27a
Ribosomal protein S27a.
    
   0.714
evc
Uncharacterized protein.
      
 0.703
brap
BRCA1 associated protein.
   
  
 0.699
PACS1
Phosphofurin acidic cluster sorting protein 1a.
    
 
 0.691
LOC101156469
Uncharacterized protein.
   
  0.636
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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