STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156386Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (748 aa)    
Predicted Functional Partners:
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
    
 0.929
m6pr
Mannose-6-phosphate receptor (cation dependent).
    
 
 0.885
H2MN86_ORYLA
ADP-ribosylation factor 6b.
    
 0.885
igf2r
Insulin-like growth factor 2 receptor.
    
 
 0.884
ubc
Ubiquitin B.
   
   0.834
rps27a
Ribosomal protein S27a.
    
 
 0.731
LOC101175393
Macrophage stimulating 1 receptor a.
    
 0.603
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.603
mst1r
Macrophage stimulating 1 receptor b.
    
 0.603
grb2
Growth factor receptor-bound protein 2b.
    
 0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.