STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trps1Trichorhinophalangeal syndrome I. (1556 aa)    
Predicted Functional Partners:
nfyb
Nuclear transcription factor Y, beta a.
    
 
 0.621
LOC101170136
Grainyhead-like transcription factor 3.
   
  
 0.541
foxa3
Me-FKH1.
    
 0.540
Psat1
Phosphoserine aminotransferase 1.
      
 0.531
nfyc
Nuclear transcription factor Y, gamma.
   
 
 0.525
chrac1
Chromatin accessibility complex subunit 1.
   
 
 0.525
gtf2a2
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
   
 
  0.518
kat2a
Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.
    
 0.517
LOC101159205
Histone acetyltransferase; Belongs to the acetyltransferase family. GCN5 subfamily.
    
 0.517
LOC105355780
SPARC-like 2.
   
  
 0.517
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.