trps1 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

trps1

Trichorhinophalangeal syndrome I. (1556 aa)

Predicted Functional Partners:

ewsr1

0.737

sp7

0.734

rabac1

0.686

rbbp4

0.632

LOC101156710

0.632

ctbp1

0.621

LOC101158706

0.621

LOC101168811

0.621

ctbp2

0.621

runx2

0.620

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101156710	rbbp4	ENSORLP00000021495	ENSORLP00000021493	Retinoblastoma binding protein 4, like.	Retinoblastoma binding protein 4.	0.900
LOC101156710	trps1	ENSORLP00000021495	ENSORLP00000004068	Retinoblastoma binding protein 4, like.	Trichorhinophalangeal syndrome I.	0.632
LOC101158706	trps1	ENSORLP00000006778	ENSORLP00000004068	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Trichorhinophalangeal syndrome I.	0.621
LOC101168811	trps1	ENSORLP00000007130	ENSORLP00000004068	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Trichorhinophalangeal syndrome I.	0.621
ctbp1	trps1	ENSORLP00000000321	ENSORLP00000004068	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Trichorhinophalangeal syndrome I.	0.621
ctbp2	trps1	ENSORLP00000040324	ENSORLP00000004068	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Trichorhinophalangeal syndrome I.	0.621
ewsr1	trps1	ENSORLP00000008429	ENSORLP00000004068	EWS RNA-binding protein 1b.	Trichorhinophalangeal syndrome I.	0.737
rabac1	trps1	ENSORLP00000029922	ENSORLP00000004068	PRA1 family protein.	Trichorhinophalangeal syndrome I.	0.686
rbbp4	LOC101156710	ENSORLP00000021493	ENSORLP00000021495	Retinoblastoma binding protein 4.	Retinoblastoma binding protein 4, like.	0.900
rbbp4	trps1	ENSORLP00000021493	ENSORLP00000004068	Retinoblastoma binding protein 4.	Trichorhinophalangeal syndrome I.	0.632
runx2	sp7	ENSORLP00000012748	ENSORLP00000006573	Runt-related transcription factor.	Sp7 transcription factor.	0.801
runx2	trps1	ENSORLP00000012748	ENSORLP00000004068	Runt-related transcription factor.	Trichorhinophalangeal syndrome I.	0.620
sp7	runx2	ENSORLP00000006573	ENSORLP00000012748	Sp7 transcription factor.	Runt-related transcription factor.	0.801
sp7	trps1	ENSORLP00000006573	ENSORLP00000004068	Sp7 transcription factor.	Trichorhinophalangeal syndrome I.	0.734
trps1	LOC101156710	ENSORLP00000004068	ENSORLP00000021495	Trichorhinophalangeal syndrome I.	Retinoblastoma binding protein 4, like.	0.632
trps1	LOC101158706	ENSORLP00000004068	ENSORLP00000006778	Trichorhinophalangeal syndrome I.	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.621
trps1	LOC101168811	ENSORLP00000004068	ENSORLP00000007130	Trichorhinophalangeal syndrome I.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.621
trps1	ctbp1	ENSORLP00000004068	ENSORLP00000000321	Trichorhinophalangeal syndrome I.	C-terminal binding protein 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.621
trps1	ctbp2	ENSORLP00000004068	ENSORLP00000040324	Trichorhinophalangeal syndrome I.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.621
trps1	ewsr1	ENSORLP00000004068	ENSORLP00000008429	Trichorhinophalangeal syndrome I.	EWS RNA-binding protein 1b.	0.737