ankra2 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ankra2

Ankyrin repeat, family A (RFXANK-like), 2. (311 aa)

Predicted Functional Partners:

RFX7

0.878

rfxap

0.658

H2LL78_ORYLA

0.657

lrp2

0.657

ENSORLP00000028404

0.657

ENSORLP00000032452

0.657

LOC100049327

0.657

ankrd49

0.547

LOC101157017

0.512

HDAC4

0.512

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000028404	ankra2	ENSORLP00000028404	ENSORLP00000004078	Uncharacterized protein.	Ankyrin repeat, family A (RFXANK-like), 2.	0.657
ENSORLP00000032452	ankra2	ENSORLP00000032452	ENSORLP00000004078	Uncharacterized protein.	Ankyrin repeat, family A (RFXANK-like), 2.	0.657
H2LL78_ORYLA	ankra2	ENSORLP00000006788	ENSORLP00000004078	Low density lipoprotein receptor-related protein 2b.	Ankyrin repeat, family A (RFXANK-like), 2.	0.657
HDAC4	LOC101157017	ENSORLP00000043738	ENSORLP00000030146	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.901
HDAC4	ankra2	ENSORLP00000043738	ENSORLP00000004078	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Ankyrin repeat, family A (RFXANK-like), 2.	0.512
LOC100049327	ankra2	ENSORLP00000032792	ENSORLP00000004078	Uncharacterized protein.	Ankyrin repeat, family A (RFXANK-like), 2.	0.657
LOC101157017	HDAC4	ENSORLP00000030146	ENSORLP00000043738	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.901
LOC101157017	ankra2	ENSORLP00000030146	ENSORLP00000004078	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	Ankyrin repeat, family A (RFXANK-like), 2.	0.512
RFX7	ankra2	ENSORLP00000036294	ENSORLP00000004078	Regulatory factor X7.	Ankyrin repeat, family A (RFXANK-like), 2.	0.878
RFX7	rfxap	ENSORLP00000036294	ENSORLP00000004908	Regulatory factor X7.	Regulatory factor X-associated protein.	0.521
ankra2	ENSORLP00000028404	ENSORLP00000004078	ENSORLP00000028404	Ankyrin repeat, family A (RFXANK-like), 2.	Uncharacterized protein.	0.657
ankra2	ENSORLP00000032452	ENSORLP00000004078	ENSORLP00000032452	Ankyrin repeat, family A (RFXANK-like), 2.	Uncharacterized protein.	0.657
ankra2	H2LL78_ORYLA	ENSORLP00000004078	ENSORLP00000006788	Ankyrin repeat, family A (RFXANK-like), 2.	Low density lipoprotein receptor-related protein 2b.	0.657
ankra2	HDAC4	ENSORLP00000004078	ENSORLP00000043738	Ankyrin repeat, family A (RFXANK-like), 2.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.512
ankra2	LOC100049327	ENSORLP00000004078	ENSORLP00000032792	Ankyrin repeat, family A (RFXANK-like), 2.	Uncharacterized protein.	0.657
ankra2	LOC101157017	ENSORLP00000004078	ENSORLP00000030146	Ankyrin repeat, family A (RFXANK-like), 2.	Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.	0.512
ankra2	RFX7	ENSORLP00000004078	ENSORLP00000036294	Ankyrin repeat, family A (RFXANK-like), 2.	Regulatory factor X7.	0.878
ankra2	ankrd49	ENSORLP00000004078	ENSORLP00000042255	Ankyrin repeat, family A (RFXANK-like), 2.	Ankyrin repeat domain 49.	0.547
ankra2	lrp2	ENSORLP00000004078	ENSORLP00000021438	Ankyrin repeat, family A (RFXANK-like), 2.	Low density lipoprotein receptor-related protein 2a.	0.657
ankra2	rfxap	ENSORLP00000004078	ENSORLP00000004908	Ankyrin repeat, family A (RFXANK-like), 2.	Regulatory factor X-associated protein.	0.658