STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fars2Phenylalanyl-tRNA synthetase 2, mitochondrial. (461 aa)    
Predicted Functional Partners:
farsb
Phenylalanyl-tRNA synthetase subunit beta; Belongs to the EF-1-beta/EF-1-delta family.
  
 0.997
lrrc47
Leucine rich repeat containing 47.
  
 0.960
farsa
Phenylalanyl-tRNA synthetase subunit alpha.
   
 
0.948
yars1
Tyrosine--tRNA ligase.
  
 
 0.884
eprs1
Glutamyl-prolyl-tRNA synthetase.
  
  
 0.849
yars2
Tyrosine--tRNA ligase.
  
  
 0.804
dars2
Aspartyl-tRNA synthetase 2, mitochondrial.
  
  
 0.800
pars2
Prolyl-tRNA synthetase 2, mitochondrial.
   
  
 0.778
lars2
Leucyl-tRNA synthetase 2, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.764
rars2
Arginyl-tRNA synthetase 2, mitochondrial (putative); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.762
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.