Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC101167577Neuronal pentraxin IIb. (438 aa)    
Predicted Functional Partners:
LOC101173001
P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.
      
 0.674
hcrtr2
Hypocretin (orexin) receptor 2.
      
 0.608
TAFA5
TAFA chemokine like family member 5a.
      
 0.567
rnf2
Ring finger protein 2.
    
 0.560
RING1
Ring finger protein 1.
    
 0.560
eed
Embryonic ectoderm development protein.
    
 0.510
ENSORLP00000026150
Chromobox homolog 6a.
 
      0.429
pcgf5
Polycomb group ring finger 5a.
    
  0.416
H2LSI7_ORYLA
Bmi1 polycomb ring finger oncogene 1a.
    
  0.416
pcgf6
Polycomb group ring finger 6.
    
  0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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