STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158095Microtubule-associated protein 1Sa. (1277 aa)    
Predicted Functional Partners:
becn1
Beclin 1.
      
 0.681
ppp1r36
Uncharacterized protein.
      
 0.650
fmr1
Fragile X mental retardation 1.
    
 
 0.632
BCL11B
Uncharacterized protein.
      
 0.602
LOC101161179
Zinc finger protein 296.
      
 0.602
LOC101155396
Im:7142702.
      
 0.602
LOC101154983
Fragile X mental retardation, autosomal homolog 2.
    
 
 0.586
fxr1
Fragile X mental retardation, autosomal homolog 1.
    
 
 0.586
sqstm1
Sequestosome 1.
   
 
 0.570
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
      
 0.549
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.