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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158095Microtubule-associated protein 1Sa. (1277 aa)    
Predicted Functional Partners:
becn1
Beclin 1.
      
 0.602
ppp1r36
Uncharacterized protein.
      
 0.589
sqstm1
Sequestosome 1.
    
 
 0.570
VMP1
Vacuole membrane protein 1.
      
 0.568
vmp1
Vacuole membrane protein 1.
      
 0.568
fmr1
Fragile X mental retardation 1.
    
 
 0.482
ppp1cc
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.447
LOC101155811
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
 
 0.446
LOC101154983
Fragile X mental retardation, autosomal homolog 2.
    
 
 0.442
fxr1
Fragile X mental retardation, autosomal homolog 1.
    
 
 0.442
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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