Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (481 aa)    
Predicted Functional Partners:
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 0.999
fbl
Fibrillarin.
   
 0.998
nop56
NOP56 ribonucleoprotein homolog.
   
 0.998
utp4
UTP4 small subunit processome component.
   
 0.993
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.993
LOC101167684
PWP2 small subunit processome component.
   
 0.992
utp15
UTP15 small subunit processome component.
  
0.990
wdr43
WD repeat domain 43.
   
 0.990
utp18
WD_REPEATS_REGION domain-containing protein.
   
 0.990
bysl
Bystin-like.
   
 
 0.989
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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