STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc39Leucine rich repeat containing 39. (334 aa)    
Predicted Functional Partners:
rtca
RNA 3'-terminal phosphate cyclase.
    
 
 0.704
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
      
 0.698
dph5
Diphthamide biosynthesis 5.
      
 0.629
trmt13
tRNA methyltransferase 13 homolog.
      
 0.608
cdc14a
Cell division cycle 14Ab.
    
 
 0.591
ENSORLP00000028654
SUEL-type lectin domain-containing protein.
    
   0.590
ENSORLP00000034371
SUEL-type lectin domain-containing protein.
    
   0.590
LOC101172768
Si:ch1073-186i23.1; Belongs to the G-protein coupled receptor 2 family.
    
   0.590
adgrl2
Adhesion G protein-coupled receptor L2a; Belongs to the G-protein coupled receptor 2 family.
    
   0.590
LOC101166443
Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family.
    
   0.590
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.