STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp16Ubiquitin carboxyl-terminal hydrolase. (865 aa)    
Predicted Functional Partners:
ubc
Ubiquitin B.
    
 0.939
usp45
Ubiquitin carboxyl-terminal hydrolase.
  
  
 
0.907
cfap298
Cilia and flagella associated protein 298.
      
 0.691
LOC101160018
General transcription factor IIA, 1-like.
   
  
 0.685
zranb1
Zinc finger, RAN-binding domain containing 1a.
    
 
 0.680
LOC101168392
Zinc finger, RAN-binding domain containing 1b.
    
 
 0.680
ercc1
Excision repair cross-complementation group 1.
    
 0.657
rps27a
Ribosomal protein S27a.
    
 0.614
ube2j2
Ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast).
      
 0.603
cep78
Uncharacterized protein.
      
 0.597
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.