Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173374Uncharacterized protein. (598 aa)    
Predicted Functional Partners:
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
  
 0.580
PUF60
Poly-U binding splicing factor b.
    
 
 0.574
LOC101171279
Uncharacterized protein.
    
 
 0.574
rrp9
Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.
      
 0.552
cherp
Calcium homeostasis endoplasmic reticulum protein.
      
 0.462
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 
 0.439
stard7
StAR-related lipid transfer (START) domain containing 7.
    
   0.429
LOC101163228
Uncharacterized protein.
   
  
 0.410
luc7l
LUC7-like (S. cerevisiae).
   
  
 0.410
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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