STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNF207Zinc finger protein 207, b. (470 aa)    
Predicted Functional Partners:
bub3
BUB3 mitotic checkpoint protein.
   
 
 0.925
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.861
srsf10
Serine and arginine rich splicing factor 10.
   
 
 0.556
sf3b1
Splicing factor 3b, subunit 1.
   
  
 0.552
sf3a2
Splicing factor 3a, subunit 2.
   
 
 0.524
H2N0H8_ORYLA
RRM domain-containing protein.
   
    0.514
SRSF3
Serine and arginine rich splicing factor 3b.
   
    0.514
rnps1
RNA binding protein S1, serine-rich domain.
   
 
 0.462
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
   0.431
ENSORLP00000038182
Uncharacterized protein.
   
 
 0.423
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.