STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prebProlactin regulatory element binding. (428 aa)    
Predicted Functional Partners:
LOC101155138
Secretion associated, Ras related GTPase 1Ab; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.991
sar1b
Secretion associated, Ras related GTPase 1B; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.991
sar1a
Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.919
stx5
Syntaxin 5A; Belongs to the syntaxin family.
   
 
 0.827
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
     
 0.827
mia3
Uncharacterized protein.
    
 0.817
LOC100529189
SEC24 homolog B, COPII coat complex component.
   
 
 0.808
sec24a
SEC24 homolog A, COPII coat complex component.
   
 
 0.808
ENSORLP00000041750
SH3 domain-containing protein.
    
 0.796
lman1
Lectin, mannose-binding, 1.
   
 0.787
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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