STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spef2Sperm flagellar 2. (1405 aa)    
Predicted Functional Partners:
spag6
Sperm associated antigen 6.
   
 0.782
lrrc40
Leucine rich repeat containing 40.
    
 0.775
spag17
Uncharacterized protein.
   
 
 0.721
lrguk
Leucine-rich repeats and guanylate kinase domain containing.
   
 0.680
ENSORLP00000042788
Dynein, axonemal, intermediate chain 1, paralog 2.
   
  
 0.642
maats1
MYCBP-associated, testis expressed 1.
   
 0.641
H2LMZ3_ORYLA
Uncharacterized protein.
   
 
 0.605
ccdc40
Coiled-coil domain containing 40.
    
 0.596
spa17
RIIa domain-containing protein.
   
 0.583
LOC101171604
Zgc:66426.
   
 
 0.569
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.