STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd13dAnkyrin repeat domain 13 family, member D. (637 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.692
H2M970_ORYLA
Ubiquitin-like domain-containing protein.
    
   0.692
lrrc73
Leucine rich repeat containing 73.
      
 0.639
tepsin
TEPSIN adaptor related protein complex 4 accessory protein.
      
 0.630
vsig10
Uncharacterized protein.
      
 0.560
nprl2
NPR2 like, GATOR1 complex subunit.
      
 0.560
polr3h
Polymerase (RNA) III (DNA directed) polypeptide H.
      
 0.559
c12h9orf16
Expressed sequence BC139872.
      
 0.485
pfdn2
Prefoldin subunit 2.
      
 0.446
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.