Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ankrd13dAnkyrin repeat domain 13 family, member D. (637 aa)    
Predicted Functional Partners:
lrrc73
Leucine rich repeat containing 73.
      
 0.870
tepsin
TEPSIN adaptor related protein complex 4 accessory protein.
      
 0.798
vsig10
Uncharacterized protein.
      
 0.757
nprl2
NPR2 like, GATOR1 complex subunit.
      
 0.728
polr3h
Polymerase (RNA) III (DNA directed) polypeptide H.
      
 0.722
fam189b
Si:dkey-7f3.9.
    
   0.658
c12h9orf16
Expressed sequence BC139872.
      
 0.587
pfdn2
Prefoldin subunit 2.
      
 0.535
fam222a
Family with sequence similarity 222 member A.
      
 0.535
LOC101165978
Uncharacterized protein; Belongs to the DOCK family.
      
 0.522
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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