STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cep78Uncharacterized protein. (773 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.911
fgfr1op
FOP_dimer domain-containing protein.
    
   0.902
ubr5
Ubiquitin protein ligase E3 component n-recognin 5.
    
 
 0.886
DCAF1
DDB1 and CUL4 associated factor 1.
    
 
 0.884
LOC101170769
Centrin, EF-hand protein, 2.
    
 0.774
cep70
Centrosomal protein 70.
     
 0.754
LOC101165296
Ciliary rootlet coiled-coil, rootletin family member 2.
    
 0.748
LOC101166347
Uncharacterized protein.
    
 0.748
armc2
Armadillo repeat containing 2.
      
 0.744
cep164
WW domain-containing protein.
   
 0.736
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.