STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdo1Cysteine dioxygenase. (227 aa)    
Predicted Functional Partners:
cth
Cystathionase (cystathionine gamma-lyase), like.
     
 0.975
csad
Cysteine sulfinic acid decarboxylase.
     
 0.939
gad2
Glutamate decarboxylase 2.
     
 0.939
gad1
Glutamate decarboxylase 1a.
     
 0.939
LOC101168897
Uncharacterized protein.
     
 0.939
GADL1
Glutamate decarboxylase like 1.
     
 0.939
got2
Aspartate aminotransferase.
     
 0.931
GOT1
Aspartate aminotransferase.
     
 0.928
got1
Aspartate aminotransferase.
     
 0.928
kyat1
Kynurenine aminotransferase 1.
     
  0.900
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.