Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdo1Cysteine dioxygenase. (227 aa)    
Predicted Functional Partners:
cth
Cystathionase (cystathionine gamma-lyase), like.
     
 0.978
csad
Cysteine sulfinic acid decarboxylase.
     
 0.957
GADL1
Glutamate decarboxylase like 1.
     
 0.957
gad1
Glutamate decarboxylase 1a.
     
 0.948
LOC101168897
Uncharacterized protein.
     
 0.948
gad2
Glutamate decarboxylase 2.
     
 0.941
GOT1
Aspartate aminotransferase.
     
 0.927
got1
Aspartate aminotransferase.
     
 0.927
got2
Aspartate aminotransferase.
     
 0.921
gclc
Glutamate-cysteine ligase, catalytic subunit.
     
 0.916
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.