STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
riok3Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (506 aa)    
Predicted Functional Partners:
nob1
NIN1 (RPN12) binding protein 1 homolog.
   
 0.983
ltv1
LTV1 ribosome biogenesis factor.
   
 0.965
riok2
RIO domain-containing protein.
   
 
0.946
tsr1
TSR1 ribosome maturation factor.
   
 0.945
bysl
Bystin-like.
   
 0.935
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 0.899
fau
40S ribosomal protein S30.
    
  0.897
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.871
pno1
RNA-binding protein PNO1; Positively regulates dimethylation of two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA. Belongs to the PNO1 family.
   
 0.858
ncoa6
Nuclear receptor coactivator 6.
   
 0.857
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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