Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159505Titin-cap (telethonin). (179 aa)    
Predicted Functional Partners:
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
 
 0.866
MYOZ1
Myozenin 1.
   
 
 0.825
LOC101165521
Myozenin 2a.
   
 
 0.736
H2M122_ORYLA
Uncharacterized protein.
   
 
 0.713
myot
Uncharacterized protein.
   
  
 0.711
LOC101170393
Myozenin 2b.
   
 
 0.707
ENSORLP00000038844
Uncharacterized protein.
   
 
 0.632
mybpc3
Myosin binding protein C, cardiac.
    
 0.616
MYL2
Myosin, light chain 2b, regulatory, cardiac, slow.
   
 
 0.587
MYL2-2
Myosin light chain 2.
   
 
 0.587
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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