STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159505Titin-cap (telethonin). (179 aa)    
Predicted Functional Partners:
MYOZ1
Myozenin 1.
   
 
 0.726
csrp3
Cysteine and glycine-rich protein 3 (cardiac LIM protein).
   
 
 0.695
LOC101165521
Myozenin 2a.
   
 
 0.695
naglu
N-acetylglucosaminidase, alpha.
      
 0.673
LOC101170393
Myozenin 2b.
   
 
 0.655
myot
Uncharacterized protein.
   
  
 0.618
ankrd1
Ankyrin repeat domain 1a (cardiac muscle).
   
 
 0.579
pex7
Peroxisomal biogenesis factor 7.
      
 0.560
slc25a3
Solute carrier family 25 member 3a; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.558
H2M122_ORYLA
Uncharacterized protein.
   
 
 0.534
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.