Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC105356519Basic helix-loop-helix family, member a15. (187 aa)    
Predicted Functional Partners:
LOC101163559
Uncharacterized protein.
      
 0.587
RPL36A
Ribosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family.
    
   0.510
lman1
Lectin, mannose-binding, 1.
      
 0.498
FADS6
Fatty acid desaturase 6.
      
 0.491
ENSORLP00000034280
Uncharacterized protein.
    
   0.480
LOC101161566
Ribosomal protein L26.
    
   0.480
tcf7l2
Transcription factor 7 like 2.
    
 
 0.455
xbp1
X-box binding protein 1.
    
 
 0.431
creb3l2
cAMP responsive element binding protein 3-like 2.
      
 0.426
LOC101162433
POU domain protein.
   
  
 0.416
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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