Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
homer2Homer scaffold protein 2. (354 aa)    
Predicted Functional Partners:
grm1
Glutamate receptor, metabotropic 1a.
    
  0.924
LOC101162937
Phosphatase and actin regulator 4a.
    
   0.611
phactr2
Phosphatase and actin regulator.
    
   0.611
LOC101158444
Phosphatase and actin regulator.
    
   0.611
LOC101166746
Phosphatase and actin regulator.
    
   0.611
phactr4
Phosphatase and actin regulator.
    
   0.611
LOC101165469
Phosphatase and actin regulator.
    
   0.611
LOC101168282
Phosphatase and actin regulator.
    
   0.611
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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