STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159117Torsin family 1. (366 aa)    
Predicted Functional Partners:
LOC101174989
Uncharacterized protein.
   
 
 0.696
LOC101156078
Uncharacterized protein.
   
 
 0.696
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
   
 0.690
cops5
COP9 signalosome subunit 5.
     
 0.680
cops2
COP9 signalosome subunit 2.
   
 
  0.669
cops8
COP9 signalosome subunit 8.
   
 
  0.649
COPS6
COP9 signalosome subunit 6.
   
 
  0.642
Htt
Uncharacterized protein.
      
 0.598
c9h9orf78
Zgc:103692.
 
    
 0.574
tmtops3a
Teleost multiple tissue opsin 3a; Belongs to the G-protein coupled receptor 1 family.
      
 0.569
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.