Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
uspl1Ubiquitin specific peptidase like 1. (1072 aa)    
Predicted Functional Partners:
desi1
Desumoylating isopeptidase 1a.
      
 0.766
c13h19orf54
Zgc:153119.
    
 
 0.760
LOC101172905
Ubiquitin carboxyl-terminal hydrolase.
    
 0.755
ice2
Interactor of little elongator complex ELL subunit 2.
   
 
 0.744
ints14
Integrator complex subunit 14.
    
 0.739
H2MSB4_ORYLA
SUMO specific peptidase 6a.
    
 
 0.728
LOC101160693
Ran GTPase activating protein 1b.
    
 0.698
rangap1
RAN GTPase activating protein 1a.
    
 0.698
ints13
Integrator complex subunit 13.
      
 0.695
Unc79
Uncharacterized protein.
    
 0.683
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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