Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
medagUncharacterized protein. (227 aa)    
Predicted Functional Partners:
uhrf1bp1l
UHRF1 binding protein 1-like.
      
 0.761
ZBTB21
Zinc finger and BTB domain containing 21.
      
 0.726
LOC101170103
Caudal type homeobox 4.
      
 0.624
LOC101171292
Guanine nucleotide binding protein (G protein), gamma 7.
      
 0.601
LOC101161831
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
      
 0.601
alox5ap
Arachidonate 5-lipoxygenase-activating protein.
      
 0.572
LOC101162453
Solute carrier family 14 member 2.
      
 0.498
LOC101160426
Uncharacterized protein.
      
 0.498
med23
Mediator complex subunit 23.
      
 0.485
cfap300
Cilia and flagella associated protein 300.
      
 0.464
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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