STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101174770Tetraspanin. (335 aa)    
Predicted Functional Partners:
LOC101172489
ADAM metallopeptidase domain 10b.
   
 0.802
adam10
Uncharacterized protein.
   
 0.802
LOC101173781
Tetraspanin.
    
 
 0.691
CD9
Tetraspanin.
    
 
 0.691
arfrp1
ADP-ribosylation factor related protein 1.
      
 0.607
sys1
Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family.
      
 0.567
LOC101168652
Alpha-2-HS-glycoprotein 2.
     
 0.498
LOC105353814
Uncharacterized protein.
      
 0.498
LOC101162863
Coiled-coil serine-rich protein 2a.
      
 0.498
LOC101158193
Tetraspanin.
     
0.497
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.