Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
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[Homology]
Score
urb1URB1 ribosome biogenesis homolog. (2245 aa)    
Predicted Functional Partners:
nol8
Nucleolar protein 8.
   
 
 0.977
H2MCJ8_ORYLA
Programmed cell death 11.
   
 
 0.975
cebpz
CCAAT enhancer binding protein zeta.
   
 
 0.950
ddx24
DEAD (Asp-Glu-Ala-Asp) box helicase 24.
   
 
 0.943
H2MDY1_ORYLA
BP28CT domain-containing protein.
   
 
 0.940
Heatr1
Uncharacterized protein.
   
 
 0.940
rbm28
RNA binding motif protein 28.
   
 
 0.930
utp20
UTP20 small subunit processome component.
   
  
 0.918
noc2l
NOC2-like nucleolar associated transcriptional repressor.
   
 
 0.915
nop58
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.908
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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