STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LE95_ORYLADysferlin, limb girdle muscular dystrophy 2B (autosomal recessive). (1304 aa)    
Predicted Functional Partners:
ENSORLP00000038535
Uncharacterized protein.
 
     0.928
ENSORLP00000029937
Uncharacterized protein.
 
     0.927
LOC101155291
Signal-induced proliferation-associated 1.
   
  
 0.831
LOC101175047
Exocyst complex component; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.
   
  
 0.821
pde6c
Phosphodiesterase.
   
  
 0.581
LOC101158728
V-rel avian reticuloendotheliosis viral oncogene homolog A.
      
 0.534
anxa6
Annexin.
   
 0.525
LOC101174851
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
   
  
 0.517
Sdhaf1
Succinate dehydrogenase complex assembly factor 1; Belongs to the complex I LYR family.
      
 0.505
aplp1
Amyloid beta (A4) precursor-like protein 1.
      
 0.503
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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