Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BTBD1BTB domain containing 1. (487 aa)    
Predicted Functional Partners:
cops2
COP9 signalosome subunit 2.
   
 0.849
cops5
COP9 signalosome subunit 5.
    
  0.845
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.828
CUL3
Cullin 3; Belongs to the cullin family.
   
 0.828
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
  0.820
cops8
COP9 signalosome subunit 8.
    
  0.813
COPS6
COP9 signalosome subunit 6.
    
  0.802
adprh
ADP-ribosylarginine hydrolase.
   
 
 0.754
gps1
G protein pathway suppressor 1.
   
  0.743
adprhl1
ADP-ribosylhydrolase like 1.
   
 
 0.726
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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