Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NEUROD2Neurogenic differentiation factor. (355 aa)    
Predicted Functional Partners:
ascl1
Achaete-scute family bHLH transcription factor 1a.
   
 
 0.641
dcx
Uncharacterized protein.
   
  
 0.616
aff2
AF4/FMR2 family, member 2.
      
 0.612
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
      
 0.552
atf3
Activating transcription factor 3.
      
 0.505
smarcc1
Uncharacterized protein.
    
 
 0.503
thoc6
THO complex 6.
      
 0.501
LOC100820722
Transcription factor 3b.
    
   0.482
tcf12
Transcription factor 12.
    
   0.482
TCF4
Transcription factor 4.
    
   0.482
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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