STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp33Ubiquitinyl hydrolase 1. (988 aa)    
Predicted Functional Partners:
Adrb1
Adrenoceptor beta 1.
    
 0.642
LOC101170279
Adrenoceptor beta 2, surface a.
    
 0.642
ccp110
Uncharacterized protein.
    
 0.626
LOC101171642
Uncharacterized protein.
    
 0.626
ubc
Ubiquitin B.
    
 0.619
lap3
Leucine aminopeptidase 3.
    
 0.604
usp10
Ubiquitin carboxyl-terminal hydrolase.
    
 0.604
rfc5
Replication factor C (activator 1) 5.
    
 0.600
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.593
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.579
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.