Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
usp33Ubiquitinyl hydrolase 1. (988 aa)    
Predicted Functional Partners:
Adrb1
Adrenoceptor beta 1.
    
 0.771
LOC101170279
Adrenoceptor beta 2, surface a.
    
 0.771
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.754
usp14
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.740
ubc
Ubiquitin B.
    
 0.693
dio2
Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).
    
 
 0.682
rfc5
Replication factor C (activator 1) 5.
    
 0.659
vac14
Vac14 homolog (S. cerevisiae).
      
 0.655
ccp110
Uncharacterized protein.
    
 0.651
LOC101171642
Uncharacterized protein.
    
 0.651
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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